Plasmid / Primer Compatibility

Below are tables showing the compatibility of common sequencing primers with common plasmids. Since we cannot provide information on all primers / plasmids in use, if you do not see the information you need, please check for compatibility yourself. We do have some advice on checking primer compatibility.

In the tables below, "+" indicates that the priming site is present. "-" indicates that, to the best of our knowledge, the priming site is not present.

Common Cloning Vectors

Vector
Mnfr
T7
T3
M13F
M13R
KS
SP6
T7 Term
pBluescript I & II
+
+
+
+
+
-
-
pPCR Script
+
+
-
+
+
-
-
pCR2.1 ,-XL, -Blunt
+
-
+
+
-
-
-
pCR-II, pCR-Blunt-II
+
-
+
+
-
+
-
pGEM-1, 9Zf
+
-
-
-
-
+(*)
-
pGEM-3Z; -3,5,7,11,13Zf
+
-
-
-
-
+
-
pGEM-4Z
+
-
+
+
-
+(*)
-
pGEM-T, -T Easy
+
-
+
+
-
+
-
pT7T3
+
+
-
-
-
-
-
Lambda Zap
+
+
+
+
+
-
-

* There is a 4 bp mismatch at the 5' end of the priming sequence in this vector.

pGEX GST-fusion Vectors

Vector
Mnfr
pGEX-F
pGEX-R
pGEX-1, pGEX-1lT
+
+
pGEX-2T, pGEX-2TK
+
+
pGEX-3X
+
+
pGEX-4T1, -4T2, -4T3
+
+
pGEX-5X1, -5X2, -5X3
+
+
pGEX-6P1, -6P2, -6P3
+
+
pEBG-2T
N/A
+
?

T7 Promoter Vectors

Vector
Mnfr
T7
T7 Term
pET (all known)
+
+
pT7-7
N/A
+
?

Baculovirus Expression Vectors

Vector
Mnfr
Forward
Reverse
pFastBac-1
+
+
pFastBac-HTa, -HTb, -HTc
+
+

Mammalian Expression Vectors

Vector
Mnfr
CMV-F
CMV-R
T7
SP6
pCDNA3
+
+(*)
pCMV5
+
+

* The "T" residue at base 4 of the new SP6 primer is not present in the pCDNA3 SP6 priming site.